EGAF00005403097 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005403097
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	59067864
Sequences flagged as poor quality	0
Sequence length	50
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	243212	0.41175011847389636	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	232697	0.39394856059125477	No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	193468	0.3275351212970897	No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG	169696	0.2872898874420107	No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	157515	0.2666678449723525	No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC	108460	0.18361930270578264	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	87894	0.1488017240643745	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	82520	0.13970371435811527	No Hit
TCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	81407	0.1378194410415789	No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT	81298	0.13763490753618582	No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT	61248	0.10369090035150076	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGAACGA	28785	31.409786	44
AAGAACG	32590	27.775835	43
GACCGCG	33880	26.715633	5
ACCGCGT	33855	26.683249	6
CCGCGTT	33880	26.6311	7
AGACCGC	34030	26.593187	4
CGCGTTC	34205	26.37824	8
CAGACCG	34680	26.248608	3
TACGGAG	35015	25.676329	34
CAATACG	35075	25.657124	31
ATACGGA	35130	25.654654	33
AATACGG	35930	25.181356	32
GCGTTCT	36385	24.858288	9
ACGGAGA	37525	23.964834	35
CGGAGAG	38775	23.282553	36
GGACCTT	45680	22.980724	44
TGGACCT	47400	22.216045	43
TCAGACC	42660	21.723494	2
CCCAATA	43745	20.752605	29
ACTCCCC	44250	20.645489	25