FastQCFastQC Report
Wed 11 May 2022
EGAF00005403162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66549438
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2302600.3459984139911144No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG1398630.21016405878589087No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1045810.15714783346479952No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC867130.1302986210041323No Hit
GTTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT810950.1218567766116973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)