FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005403191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18565286
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGGAAGAGACTTTATTTGGCCCCAGCCCCTAGCCCCACAGCCAAGACA239350.12892341114486466No Hit
GAGGTATTGATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGC226110.12179182157495447No Hit
GCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGTAACTCAGCTACT221510.11931407897513673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)