FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005403420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25444647
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGTA222150.0140.212161
ATTCGCG115850.0136.794982
CGGTTCG122350.0135.333594
TAACGCG117250.0132.93029
CCGTACT217400.0131.142781
TATAGCG212150.0130.396265
AGGCGAC224150.0129.818548
CGGTCGT76950.0129.541083
GTACGTA264500.0129.419751
AACCGCG72500.0129.3021
CGGTTAA269500.0128.455571
TACTCGC132050.0127.762121
GCGGTCG76900.0127.457792
CGCTCCG113150.0127.048035
CGGTGCG93050.0126.834139
GGCTACG187200.0126.708449
CCGGTCG70700.0125.607765
GGTAACG204600.0124.861457
CGGTATC130000.0124.469883
ACCGCGT71150.0124.410422
Produced by FastQC (version 0.11.5)