FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005403433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26625644
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGACG159900.0125.71814
ACGACGC160200.0125.482675
CGACGCT161300.0123.4134756
ACACGAC177150.0113.5581363
CTACACG181700.0111.859571
GACGCTC179400.0110.920197
TACACGA188550.0107.0771262
ACGCTCT193150.0103.0615168
CGCTCTT217650.091.458399
TCCGATC198350.019.74318915-19
TTCCGAT206700.019.56344810-14
CTTCCGA211500.019.30454610-14
TCTTCCG228100.017.8424510-14
CCGATCT235100.016.90985115-19
CGCCGTA284050.012.99472860-64
TCGCCGT287200.012.77648260-64
CGATCTA67600.012.69696415-19
CGTATCA288000.012.645740565-69
GCCGTAT292650.012.49891560-64
GTCGCCG304150.012.28849460-64
Produced by FastQC (version 0.11.5)