FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005403435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24787597
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGACGC114750.0122.240795
CGACGCT114100.0121.920636
CACGACG117050.0119.714924
GACGCTC132000.0105.715897
ACACGAC137350.0102.232473
CTACACG142500.099.300361
TACACGA144350.097.62722
ACGCTCT147550.095.016888
CGCTCTT168250.083.540929
CGGTACG8700.024.1638764
TCCGATC142550.019.07027815-19
TTCCGAT152750.018.4903610-14
CTTCCGA157500.018.07080310-14
CGCCGTA300500.016.78941260-64
CCGATCT165600.016.71354515-19
TCGCCGT301450.016.64512360-64
TCTTCCG171750.016.62212810-14
GCCGTAT308500.016.24594160-64
GTCGCCG311850.016.20624460-64
CGTATCA310600.016.00594965-69
Produced by FastQC (version 0.11.5)