FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005403437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25994371
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGACGC153050.0123.858885
CGACGCT152000.0123.617576
CACGACG155400.0122.359044
CTACACG174600.0110.2862851
GACGCTC171550.0109.65557
TACACGA178700.0107.460042
ACACGAC178450.0107.122913
ACGCTCT188500.099.603148
CGCTCTT208600.090.352019
CGACGGT11700.021.9024241
TCCGATC190600.019.68627215-19
CTTCCGA203850.019.16124310-14
TTCCGAT202000.019.03526710-14
TCTTCCG213800.018.19490410-14
CCGATCT218050.017.52050615-19
CGATCTA70000.015.47193715-19
CGCGACA14250.014.7527134
ACGCGAC10900.013.9663073
CGCCGTA296250.013.30123560-64
TCGCCGT301100.012.95216660-64
Produced by FastQC (version 0.11.5)