FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005403476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22844444
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCG355300.0139.244486
CGCGGTA197150.0138.612231
GTCGCGG357050.0138.368367
ATGGTCG364700.0137.433794
AACGCGC132000.0136.584649
CTTACCG280400.0136.478521
TGGTCGC363100.0136.46195
CGCGGCA358800.0135.652839
TAGTTCG321650.0135.338032
TCGCGGC367000.0135.249058
CGCGTAA123750.0134.696565
GCGCAAC302050.0134.380581
GGTAACG278300.0134.151037
TCCCGAT345750.0134.010011
GTTATCG317900.0133.516949
CGCAACT296550.0133.492682
CGGCTAG268800.0133.461731
CTCGTAC187700.0133.108281
GTCGTTA278450.0132.777027
CGAACAT405900.0132.546981
Produced by FastQC (version 0.11.5)