FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005403504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28133060
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGTCGG143850.0130.564949
CCGATCA230900.0128.869613
CGGTACG61100.0128.367516
CGCGTTC100750.0126.270735
GTCGACG39700.0126.170158
CGTCGCG62850.0125.715936
CGACACG88950.0125.337495
TCCCGAT212650.0124.334171
GCCGATC167100.0124.312642
CGGACGT92750.0123.656341
CTCGCGT105600.0123.313183
GGCCGAT175200.0123.290821
TTGATCG228900.0123.030939
GACGGCT214350.0122.904751
CGCGCAA57450.0122.896514
CACGTCG152650.0122.895668
GCTACCG176900.0122.385252
AGACGTT311100.0121.384091
CATAGCG176250.0121.0407945
CGCTGGA316100.0120.250311
Produced by FastQC (version 0.11.5)