FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005403530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23766818
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTACCG46750.0128.861927
CGGCTAG189450.0127.962661
CGCGATA71350.0127.9055252
CCGATCG47100.0126.183994
TAGTCGA141700.0124.570475
CGTACGT63000.0123.700977
TAGGTCG109200.0123.612469
ACGTACG62900.0123.3213656
CTTACCG134000.0123.296251
TCGCGAG106250.0122.873891
TATCGCG48050.0122.81076
TAACGCG45200.0121.2708742
GATCGAT124650.0119.547831
TCGTCGC41850.0117.273116
ATCGTTA153950.0117.111987
TCTACGG128850.0116.238798
CGCAACG39250.0116.1759349
GTACCGT110350.0116.083218
CGCAACT110000.0115.9650342
CTAGTCG71500.0115.884735
Produced by FastQC (version 0.11.5)