FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005403540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21675117
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGTA191250.0139.412491
GGTCGCG335250.0138.26746
GTCGCGG334850.0138.042867
ATGGTCG342050.0136.951784
TGGTCGC342400.0135.562215
CGCGGCA334850.0135.358229
AACGCGC124900.0135.241329
TAGTTCG303150.0135.155652
TCGCGGC343900.0135.063648
GCGCAAC279450.0134.797911
TCCCGAT329550.0134.70341
CTTACCG264350.0134.104161
GGTAACG265500.0133.879277
GTTATCG288500.0133.709859
CGGCTAG260250.0133.468381
GTCGTTA263200.0133.451637
CGAACAT387050.0133.304371
CGTAGCG129450.0133.231939
CGCGTAA110950.0132.961535
CGCAACT277150.0132.875852
Produced by FastQC (version 0.11.5)