FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005403554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80209795
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTACG173950.0130.858556
CCGATCA642950.0129.248283
ACGTCGG427400.0128.02389
CGTCGCG181100.0127.0130846
GTCGACG113000.0125.547698
CGACACG262650.0124.8665545
TCCCGAT589050.0123.641481
CACGTCG443650.0123.449788
GCCGATC476100.0123.412312
TTGATCG661150.0123.231299
GCTACCG519150.0122.911392
GACGGCT611700.0122.682131
GGCCGAT497900.0122.109761
CGCGTTC286750.0122.0322955
CGGACGT255600.0121.933981
CCGGTAG411450.0121.0256041
TCGTCGC190800.0120.9755
TCGTCCG153500.0120.428336
CTCGCGT298800.0120.0473863
AGACGTT919250.0120.047151
Produced by FastQC (version 0.11.5)