FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005403564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71680198
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGCGA358000.0128.59678
CGCGGTA272450.0128.009771
ACGCGAT362100.0126.6001059
ACGGTCG150150.0126.574464
TCCGCGA193750.0126.570068
GTTCGGG602100.0126.485151
ATCCGCG180450.0123.76727
CATATCG439350.0123.498334
GTCGACG116450.0123.12827
TTACGCG91700.0121.7368559
CGGTTAA440600.0119.9151
GTCCGAC198250.0118.943747
TTCGGGC421850.0118.620352
CTTACCG304900.0118.451231
GGCGACT332800.0118.0539861
TCGACGA140100.0117.865398
TCGTCCG126400.0116.4752356
CGCTATC305900.0116.062111
CGTAACG117350.0114.709537
TGCGATA408700.0114.520652
Produced by FastQC (version 0.11.5)