FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005403569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences172654385
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGACGC439800.0111.456845
CGACGCT443150.0110.123546
CACGACG449050.0109.192784
GACGCTC556600.088.341637
ACACGAC576850.085.3530963
CTACACG605550.082.199141
TACACGA607450.081.4235152
ACGCTCT641850.076.055048
CGCTCTT786500.062.1776129
CGCCGTA3874600.020.07004260-64
TCGCCGT3907700.019.82397860-64
GCCGTAT3933250.019.66276660-64
GTCGCCG3994100.019.4437960-64
CGTATCA3967700.019.42019865-69
TGGTCGC4112450.018.95431555-59
CCGATCT722000.018.9340381
GTGGTCG4193200.018.69303155-59
CCGTATC3954850.018.6833565-69
GGTCGCC4085250.018.24798860-64
TCTCGGT4452100.017.70859150-54
Produced by FastQC (version 0.11.5)