FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005403579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174118662
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGACGC401150.0111.371525
CGACGCT405800.0109.131656
CACGACG416150.0107.418374
GACGCTC524550.085.379527
ACACGAC553450.081.270763
TACACGA563950.080.071332
CTACACG569700.079.708091
ACGCTCT601200.073.794888
CGCTCTT743600.059.719749
CGCCGTA3574650.019.64562260-64
TCGCCGT3604900.019.38746360-64
CCGATCT678150.019.362391
GCCGTAT3629300.019.24074460-64
CGTATCA3665600.019.01847865-69
GTCGCCG3699600.018.92176260-64
TGGTCGC3792550.018.49321755-59
CCGTATC3663200.018.26428665-69
GTGGTCG3871750.018.20443555-59
GGTCGCC3795650.017.74088560-64
TCTCGGT4132300.017.13925750-54
Produced by FastQC (version 0.11.5)