FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005403582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005403582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences170618218
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGTA546650.0126.704181
CGATTCG412050.0125.8345954
CGATCGA447350.0120.9631045
CGTATCG240100.0119.117994
GACGCGT368150.0117.926011
GACACGC1080600.0117.207241
CGCGATT485750.0116.488412
CGTCGAC244300.0116.403337
CGGACGT401850.0115.9859541
TCCGCGA285100.0113.881828
GACGGCT968850.0113.553641
CCGATCG273150.0112.534884
TCGTTCG319800.0112.450488
ACGATAC589450.0112.283161
ACCGTAA828450.0109.979631
TACTCGC632550.0107.406081
CAGCGAC1079150.0106.648411
GCGACGT473600.0106.4076463
GGCCGAT653150.0106.100271
TAAACCG556900.0105.9558641
Produced by FastQC (version 0.11.5)