FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005404184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005404184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7888498
Sequences flagged as poor quality0
Sequence length79
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCTAG19950.016.283681
GTATTAG15400.015.643311
GTATAGG11850.015.0932641
GTTCTAG20350.014.3493091
TCCGAGC108000.014.1605273
CTAGACT17100.013.4480124
TCTAGAC17350.013.2539853
GGTCTAA15150.013.2512071
GTACTAT15850.012.8962711
GTGCTAG20450.012.4942491
GTCTTAA22000.012.4435421
GTACTAA14750.012.37323951
ACGAGAC21000.012.340363573
CCGAGCC94350.012.22458473
GTTCTAA23600.012.2185741
GTCTTAG16800.012.1670181
GTATAGA18000.011.9642351
GCCCTAG19850.011.9524861
TATACCG2751.3431325E-411.94617755
CTAGTAC8900.011.8936023
Produced by FastQC (version 0.11.5)