FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005404218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005404218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13490149
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTAG26700.016.9125161
TACGCGA2401.9626532E-716.0432932
GTGCTAG31450.015.9164121
GCTCTAG37700.015.5990341
GTCCTAG29900.015.1024811
GTATATA52150.014.76719951
GTCTTAG28700.014.2703211
GTACTAA26950.013.8980791
GTATAGG21800.013.8093011
TAGTGCG6100.013.77004957
GTCTAGA29500.013.5273481
GTATTAA42000.013.5019191
GTCCTAA26450.013.1020511
GGTCTAG25900.012.9748171
GTATAGA30400.012.896571
TATACTG43700.012.8163245
GTGCTAA31450.012.5773051
CTATACT32850.012.5738064
GTACAGG58750.012.5721
GTACTAG16800.012.5017771
Produced by FastQC (version 0.11.5)