FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005404292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005404292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11051956
Sequences flagged as poor quality0
Sequence length79
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGAGAC35700.014.4157373
TCCGAGC187900.014.41328273
GTACTAG11950.014.3587911
CGAGACA32300.014.35115973
CCGAGCC163050.014.10280473
GTATTAG21850.013.8680241
GTCCTAG25600.013.8331061
GGTCTAG18850.013.751021
GTGCTAG26550.013.6131491
GTTCTAG30650.013.2214921
GTCTTAG22500.012.8183621
CGAGCCC122250.012.42024773
GGTCTAA20550.012.0805031
GTTCTAA31850.012.0356021
GTCCTAA21900.012.0026271
GTACTAA19350.011.8863231
CTCCGAG239750.011.8594573
CACGAGA43750.011.84666372
GTATTAA32100.011.82813551
GCTCTAG30450.011.7496991
Produced by FastQC (version 0.11.5)