FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005404342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005404342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10686838
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACTAG11750.019.072941
GTATTAG18300.017.7953851
GTGCTAG26000.015.4881681
GTACTAA18150.015.434371
GTCCTAG26300.015.3114981
ATCTCCG124200.014.56986370
GTATTAA28150.014.0564491
GTCTTAG21250.013.3475521
GTTCTAG28650.013.3222451
GTACTAT19150.013.1655581
GTATATA31950.013.1518231
GTGTTAA28350.012.9691571
CGATCGT4601.0004442E-1012.93624138
GTACAAG39000.012.74968051
GTTCTAA27750.012.618641
GTATAGG15200.012.4401531
TCTCCGA101850.012.33729570
TCTATAC20800.012.28783
GCTCTAG30500.012.1697471
GTCCTAA23550.012.0439691
Produced by FastQC (version 0.11.5)