FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005404349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005404349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10061021
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACTAG9500.019.1551651
GGTCTAA16800.016.2476841
GTATTAG16850.016.199471
GTACTAA16150.015.1681171
GTCCTAG25200.015.1367331
CGATCGT3957.2759576E-1215.06496438
GTTCTAG24700.015.0181031
GTCTTAG22150.014.5351761
GTATATA30700.014.2487841
GTTCTAA26500.013.9980071
GTATTAA23600.013.9386921
TCTGACG94050.013.69507170
GTATAGG13550.013.68808651
GTACATA23700.013.1415881
GTGCTAG24350.013.0782191
GCCCTAG25200.013.0536971
TGTACCG9150.013.0044535
GCTCTAG29550.012.7900571
GTGTTAG24950.012.7637121
GTCCTAA20650.012.7100531
Produced by FastQC (version 0.11.5)