FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005404595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005404595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6344630
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGCGTT14050.031.992321145
GTCCTAG24400.023.7927671
CCGTATA13150.023.155485145
CGCCGTT14650.021.27949145
GACGATA31000.020.814152145
TAGATCG12350.020.546198145
GCCGACC29500.019.906427145
CTAGACT21500.019.5574874
TCTAGAC23000.019.5443673
GTACTAG12850.019.2008551
GTATTAG19700.018.7866251
GTATTAA33850.018.6511381
GTCTTAG22250.018.264291
GTTCTAG27500.018.2079541
GCTCTAG28300.017.9496671
GTGCTAG22700.017.9022241
GTTCTAA31100.017.5003091
GTATATG28700.017.4466481
GTACTAT19700.017.3131641
GTACCGT7200.017.1172126
Produced by FastQC (version 0.11.5)