FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005404656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005404656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8757342
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTAG29050.020.4635891
CTATACT32050.018.7762474
TCTATAC31650.018.32613
CTAGATG128100.018.224913145
ACCGTAA23200.017.813349145
GTCTTAG30150.017.793381
CGTCTTA20750.017.470715145
GTGCTAA34200.017.3820841
GTTCTAA41750.017.3643111
CACGAGC117900.017.341793145
CTAGACT28750.017.1486434
GTATATA49250.016.9280011
CTCCGAC35850.016.786018145
GTATATG38950.016.7513221
GTTCTAG42250.016.6440531
GTACAGG65100.016.4814261
TAGATCG38100.016.36561145
GTCCTAA31550.016.3144741
GTATTAA45200.016.1993271
TATACTG44800.016.1838075
Produced by FastQC (version 0.11.5)