FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005404711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005404711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8191896
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTT14050.034.564613145
ACGCGTT8400.032.789707145
TACGCGG18850.023.455881145
GTACTAG17550.022.3541661
GTACTAA26050.019.8012431
GTCCTAG32750.019.5215021
GTATTAG27300.019.4268341
GTTCTAG36700.019.2020451
GACGATA24750.019.03581145
GTATTAA44400.018.9809021
TTATACC67600.018.763962145
GTGCTAG31200.018.3956151
CCGTATA13050.018.32891145
GTACTAT26850.017.8583551
CTGCCGC152750.017.31988145
GCCCTAG30250.017.2921491
CTGTACT65150.017.1408794
TCTGTAC66350.016.9481323
GTCCTAT30050.016.9237041
GTCCTAA28650.016.7363661
Produced by FastQC (version 0.11.5)