FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005404746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005404746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8180043
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACTAA27300.021.2496681
GTGCTAG33050.020.185581
GTCCTAG33450.019.2938421
GTTCTAG39350.018.7966421
TGCCGTG55050.018.305605145
GTCTTAG30450.017.8607121
GTATTAG25600.017.8453661
CGTCTTG43300.017.7478145
GTATTAA43100.017.4976981
GTATACG7500.017.403481
GTATATA46100.017.3028071
CTATACT30950.017.1030564
GGTCTAA26750.017.078181
GTATAAA52900.016.586491
GCTCTAG36100.016.4714371
GTACTAG16300.016.4603461
GTGTATA35450.016.159791
GTATATG39800.016.0333561
CGTCTTA31200.016.033234145
GGTCTAG25950.015.928041
Produced by FastQC (version 0.11.5)