FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005404764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005404764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9528694
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTAG34450.020.62511
GTCCTAG40950.018.590651
GTGCTAG39250.018.2875181
GTATTAA50950.018.2148251
CGTCTTG49900.018.161543145
GTTCTAG44700.018.0042361
GTACTAG21000.017.9532571
GTACAGA71800.017.5704961
CGTCTTA37950.017.384928145
GTATATA56600.017.2932471
GTATAGG26600.016.8993231
GGGGGGG4032750.016.023811145
GTCTTAA44350.016.0210761
GTACTAT30900.015.9554721
ACCGGAC27350.015.9051285145
CGAATCG7302.0008883E-1115.8927729
GTCCTAA34850.015.8113881
GTACATG64850.015.7640691
GTACAGG68200.015.7339071
GCCCTAG36850.015.54351
Produced by FastQC (version 0.11.5)