Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005405034 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10253024 |
Sequences flagged as poor quality | 0 |
Sequence length | 79 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCCTAG | 2875 | 0.0 | 17.019548 | 1 |
GCGAGAC | 4465 | 0.0 | 15.3684845 | 3 |
GTACTAG | 1775 | 0.0 | 15.223497 | 1 |
GAGCGAG | 4930 | 0.0 | 14.221172 | 1 |
CGAGACT | 4545 | 0.0 | 14.053964 | 4 |
GCGCTAG | 365 | 4.8839865E-9 | 14.006068 | 1 |
AGCGAGA | 4960 | 0.0 | 13.761146 | 2 |
GTGCTAG | 3180 | 0.0 | 13.320238 | 1 |
GTTCTAG | 3595 | 0.0 | 13.306183 | 1 |
GTCTTAG | 2985 | 0.0 | 13.089424 | 1 |
GTACAGG | 4010 | 0.0 | 12.839728 | 1 |
CGCTATA | 345 | 5.2665746E-7 | 12.695705 | 2 |
GGCCTAG | 3200 | 0.0 | 12.666426 | 1 |
GTATTAG | 3155 | 0.0 | 12.3841305 | 1 |
GTGCAGA | 6550 | 0.0 | 12.320606 | 1 |
GGTCTAG | 2090 | 0.0 | 12.230181 | 1 |
GGTCAGG | 12530 | 0.0 | 12.152513 | 1 |
CAGGACT | 6140 | 0.0 | 12.127087 | 4 |
GTCCAGG | 7570 | 0.0 | 12.011148 | 1 |
GCTCTAG | 2905 | 0.0 | 11.941491 | 1 |