FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12662998
Sequences flagged as poor quality0
Sequence length125
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAGG20100.016.5959191
GTATTAA46300.015.1813491
GTATTAG26900.015.0579541
CTAATAC31200.014.8919933
TATACTG40450.014.8730545
CTATACT27550.014.70284
GTATAAG29650.014.6658591
TAGACCG9500.014.4212045
CTAGACT31400.014.4177244
GTATTAT47150.014.4023221
GTGTACG20900.013.9655851
GTATATA52700.013.902851
ATAATAC47150.013.8970873
TAATACA55350.013.8830484
TACGACA19400.013.8173114
GTATAAA65750.013.7707371
GTATAGA32250.013.66821
TAGACAG52000.013.5168645
CTACACT35000.013.4453414
TACACAG67600.013.3935025
Produced by FastQC (version 0.11.5)