FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7691769
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGACT18100.016.4551834
TATACTG26650.014.7515685
TATAGTG17600.014.2143875
GTATATA35050.014.1059181
GTCTAGG19650.013.9446161
GTATAGA21900.013.8719441
TAGACCG4751.0848798E-613.794015
TAGACTG28650.013.7217895
GTGTTAG21750.013.6937391
TAGACAG28850.013.6266665
GTGTACG10550.013.550961
GTATAAA42350.013.5029631
GTGTTAT25700.013.2115281
TAGACGG8151.4551915E-1113.155475
GTATAAG19100.013.098671
GTACTAG10050.013.0397081
GTATATG25350.012.9239721
GTATAAC14800.012.8795171
GTCTAGC14850.012.8361521
TATATCG7456.348273E-1012.7924925
Produced by FastQC (version 0.11.5)