FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8642029
Sequences flagged as poor quality0
Sequence length125
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTATAC20400.015.7695883
GTATAGA19850.015.6054711
TAGACAG35050.014.9575855
ATACCGC7600.014.8777646
GTACTAA14550.014.7391871
GTATAGG13850.014.62391
CCTACAC34150.014.4791863
TATACAG27650.014.2205265
TAGGGTG26650.014.08348755
CTATACT19050.014.0728444
TACACCG10650.013.9848325
GTATAAG18800.013.6252551
TAATACT32950.013.56032854
GTATTAG18500.013.5242011
TATACTG26650.013.1892985
TATAGTG19100.013.1003475
TAGCACA30700.013.00171854
ATAATAC29650.012.8591433
GTCTTAC28000.012.765191
GTATTAC19750.012.6682391
Produced by FastQC (version 0.11.5)