FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26680734
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG126950.018.0450235
GTATAGG56900.017.9873661
GTATTAG77950.017.0231571
TATACCG14600.016.7093855
CTATACT80300.015.9313714
CCTAGAC89450.015.0334673
TACACTG151300.015.02290255
GTATATA168200.015.01
TAGACCG19150.014.9142675
GTATAGA84350.014.4617281
TTATACT157850.014.3995534
GTATAAG80600.014.3963021
CTACACT108650.014.3483444
CTAGGAC102950.013.7556673
CTAGACT88500.013.7156734
GTCCTAG93750.013.5829441
GTGTAGG115300.013.4698461
GTATAAT121150.013.4579391
TATACAG129150.013.3608165
GTCTAGG86250.013.3152591
Produced by FastQC (version 0.11.5)