FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17045317
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTAG40550.017.3155381
GTGTACG20000.016.0660341
GTATACG8300.015.7720991
GTATATA82800.015.7383311
GTATAAG43200.015.5646581
TATACTA45350.015.3513235
CTATACT41550.015.3232184
GTGTAGG61750.015.225271
GTATAGA45600.015.0064481
TATACTG68650.014.9081965
TAGACCG10850.014.8071435
GTCCTAG50900.014.7298281
TATACAG65050.014.635585
GTGTATA58150.014.6329271
GTACGAC14750.014.5227543
CCTAGAC49850.014.4430453
CTACACT55450.014.3793914
GTATAGG28200.014.348441
GTGTAGA67200.014.2561251
CTAGACT49100.014.0576834
Produced by FastQC (version 0.11.5)