FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23873235
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATATA154800.017.2209431
GTATAAG72750.016.68581
TATACTG112400.016.46355
CTATACT75650.015.8880454
TATACAG113950.015.19520955
GTATTAG68950.015.1026681
CTAGACT81900.015.0388454
TACACTG130900.014.8640165
TAGACTG100550.014.8531895
GTGTATA103200.014.7608081
GTATAGG52850.014.7494621
TACGACA34400.014.5294414
GTCTAGG78400.014.4966351
GTGTACG41350.014.39045051
GTATAGA78500.013.7959511
GTGTAGA107500.013.7829061
CTAATAC75200.013.7676693
GTCTAGA82350.013.7290321
GTACGAC26500.013.6966053
GTGTAGG101700.013.6913021
Produced by FastQC (version 0.11.5)