FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24028687
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG112000.018.3820425
CTATACT72150.018.308524
GTATAGA74950.016.8307881
GTATTAG72350.016.119731
CTACACT95550.016.066664
TACACTG131000.015.6705235
GTATAAG71950.015.547741
GTGTACG40000.015.322071
TCTATAC79250.015.3168443
TATACAG113450.015.3148965
GTATACG13700.015.2015441
GTATATA153900.015.1561071
GTGTATA104250.014.8401241
GTATTAT125100.014.697431
GTGTAGG99150.014.4632051
GTCTAGG80100.014.3372221
GTACGAC30450.014.2650723
TAATACT132300.014.1673074
GTGTTAG88650.013.7599031
GTACTAG42400.013.6127581
Produced by FastQC (version 0.11.5)