FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14606037
Sequences flagged as poor quality0
Sequence length125
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTAG34500.017.5927141
GTGTACG18950.017.5845221
GTATAGG24850.016.522451
GTGTAGG54600.016.3474661
TATACTG52650.016.2746965
GTATAGA37550.015.5298731
GTATAAG36450.015.5087881
GTGTAGA55050.015.4571891
GTGTATA48250.015.0457651
TAGACAG67200.014.964645
GTCTAGG38250.014.934531
GTATTAA59950.014.88861
TACACAG85000.014.5610685
TACACTG65500.014.5354165
CTAGACT38950.014.5132594
TATACCG7401.8189894E-1214.4740335
TACGACA18100.014.4651494
GTATAAT51200.014.4113121
GTCCTAG41750.014.3951651
TAATACT61400.014.2461584
Produced by FastQC (version 0.11.5)