FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24563068
Sequences flagged as poor quality0
Sequence length125
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG113700.018.0545355
GTATAGG49800.015.891311
CTATACT75350.015.6354224
TACACTG127600.015.4815725
GTATTAG68900.015.2859141
TACACCG26050.015.0752275
GTGTACG37950.015.0520911
CTACACT91700.014.729374
CTAGGAC92050.014.5440843
GTATATA154600.014.5100611
TCTATAC80750.014.2950893
GTATAGA79800.014.2418971
TAGACAG131050.014.2113385
TATACAG118350.014.1275135
CCTATAC56500.013.7959153
GTATTAA126400.013.7929741
TAGACTG103450.013.4014895
TTATACT139450.013.2272884
CTAACAC92700.013.15836053
GTATTAT122250.012.947031
Produced by FastQC (version 0.11.5)