FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCCGAT6600.00438413687.1832971
CCCTATT12551.1828688E-66.7998061
GATCGGA8602.9467628E-96.639894-95
ATCGGAA11453.6379788E-126.44166994-95
AGATCGG11901.0913936E-116.198387692-93
CCTAAAT20201.576882E-85.86754471
GGTCACG11400.00435347585.4063761
GTCGTGT5900.0062531665.24244194-95
CCCAAAA39150.05.0861051
Produced by FastQC (version 0.11.5)