FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGCGC3601.4624257E-411.837261
CCCCGAA7750.00280983566.7205091
GCGTCGT4704.054348E-46.59078394-95
CGTCGTG5352.8362987E-46.239660392-93
CCCAATT18551.06039806E-75.87077051
GATCGGA9003.231089E-75.824674694-95
TCGTGTA5100.0072084235.606639494-95
CCCTAAA22152.0652806E-85.5579011
CCCAAAG49500.05.06969551
CCAGAAT39350.05.05377341
AGATCGG10902.3419398E-65.02797294-95
Produced by FastQC (version 0.11.5)