FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4000000
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTAGT11251.1066122E-56.77323251
CCACGGT11951.8402869E-45.97794441
ATCGGAA11401.033186E-95.833171494-95
AGATCGG11102.0268999E-85.56290892-93
CCAAAGT42050.05.5349242
GATCGGA10301.4059515E-75.53382792-93
CCCTGAT28401.2714736E-95.1984261
CCTTAAT18802.5052472E-55.0664141
CCCTAAT12250.0095825645.0540061
Produced by FastQC (version 0.11.5)