FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22668162
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG124400.09.21813494
ATCGGAA99550.09.01707494
GATCGGA99250.08.61821592-93
TAGATCG43300.07.543507692-93
TCGGAAG121850.07.32827394
CGTATGC17950.06.41493746-47
TATGCCG18750.06.01584348-49
CGGAAGA140550.05.818244594
CTCGTAT19750.05.11645744-45
Produced by FastQC (version 0.11.5)