FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23216852
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA123450.010.73625694
ATCGGAA114900.010.06259394
AGATCGG150900.09.74877394
TAGATCG50750.08.79796994
AGAGCGT84650.08.10626494
TCGGAAG141400.06.74747892-93
GCGTCGT40350.06.2899294
AGCGTCG48950.06.241019294
CAGATCG78700.06.151164594
AAGAGCG105900.06.124603794
CGGAAGA162950.06.08587494
CGTCGTG46350.05.57709294
GTCGTGT46100.05.403433394
TCGTGTA35100.05.35608892-93
GAGCGTC90450.05.300129494
AAGATCG71450.05.196604794
Produced by FastQC (version 0.11.5)