FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24204608
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA151050.010.2051794
ATCGGAA142350.010.20159594
TAGATCG59500.09.8732594
AGATCGG181000.09.2175894
TCGGAAG167550.07.657470794
AAGATCG83650.07.359909594
CGGAAGA180550.07.05405694
CAGATCG83750.06.284928394
GAGATCG105950.05.145459794
Produced by FastQC (version 0.11.5)