FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24778497
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA113650.09.47114494
AGATCGG139800.08.47285594
ATCGGAA108450.08.45164994
TAGATCG46350.07.605853694
TCGGAAG144600.06.20871194
CGGAAGA167350.05.72981894
AAGATCG72000.05.4838294
CAGATCG71900.05.229949594
Produced by FastQC (version 0.11.5)