FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23938124
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA111650.09.76648194
ATCGGAA105950.09.22722794
AGATCGG141500.08.8355694
TCGGAAG137400.07.012550494
AGCGTCG55300.06.96943594
GCGTCGT41300.06.94206594
TAGATCG40700.06.813440394
GAGCGTC98550.05.81851494
AGAGCGT84900.05.619192-93
AAGATCG74050.05.522084794
CGGAAGA155950.05.515369494
CAGATCG68900.05.048023794
Produced by FastQC (version 0.11.5)