EGAF00005405937 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005405937
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23428614
Sequences flagged as poor quality	0
Sequence length	100
%GC	50

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	13085	0.0	10.562473	94
ATCGGAA	12180	0.0	10.035016	94
AGATCGG	15605	0.0	9.1279	94
CGCCGTA	1800	0.0	8.877646	46-47
TCGGAAG	14900	0.0	7.9822674	94
TAGATCG	5340	0.0	7.7910147	92-93
CGTATCA	2075	0.0	7.248155	50-51
GCGTCGT	4475	0.0	7.143448	94
AGAGCGT	8635	0.0	6.9140644	94
GCCGTAT	2190	0.0	6.7602386	48-49
AAGAGCG	10740	0.0	6.259271	94
AGCGTCG	5800	0.0	6.2410083	94
CAGATCG	7355	0.0	5.8163524	94
CCGTATC	2925	0.0	5.6239023	48-49
CGGAAGA	16440	0.0	5.576026	94
GTCGTGT	5105	0.0	5.525193	94
AAGATCG	7275	0.0	5.298743	92-93