EGAF00005405949 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005405949
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23307065
Sequences flagged as poor quality	0
Sequence length	100
%GC	51

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	13645	0.0	10.781555	94
GATCGGA	14425	0.0	9.579484	94
AGATCGG	17490	0.0	9.2444105	94
TCGGAAG	15865	0.0	7.998975	94
TAGATCG	5680	0.0	7.695648	94
AGCGTCG	6580	0.0	7.2859282	94
CGGAAGA	17605	0.0	6.407459	94
CGCCGTA	1850	0.0	6.351245	46-47
AGAGCGT	9925	0.0	6.061639	94
GCGTCGT	4910	0.0	5.7435493	94
CGTCGTG	5410	0.0	5.733995	94
AAGAGCG	12660	0.0	5.531758	94
GAGATCG	10360	0.0	5.4441752	94
CAGATCG	8240	0.0	5.418848	94
GAGCGTC	11020	0.0	5.3740234	94
AAGATCG	7525	0.0	5.3403563	92-93
TCGTGTA	4420	0.0	5.3168983	92-93
CGTGTAG	5415	0.0	5.0343122	94