EGAF00005405951 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005405951
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23416506
Sequences flagged as poor quality	0
Sequence length	100
%GC	51

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	14785	0.0	9.409574	94
ATCGGAA	13715	0.0	9.2184105	94
AGATCGG	17740	0.0	8.95494	94
TAGATCG	5810	0.0	8.089533	94
CGCCGTA	1780	0.0	7.393067	46-47
TCGGAAG	16655	0.0	7.323039	92-93
CGGAAGA	18060	0.0	7.312875	94
CGTCGTG	5340	0.0	6.337104	94
AGAGCGT	10040	0.0	6.179307	94
CAGATCG	8235	0.0	6.1639585	94
GCGTCGT	4875	0.0	6.07387	94
AAGAGCG	12665	0.0	5.9747567	94
TCGTGTA	4385	0.0	5.680752	94
CGTATCA	1945	0.0	5.5576963	50-51
AAGATCG	7890	0.0	5.5399456	94
AGCGTCG	6595	0.0	5.487512	94
GAGCGTC	10555	0.0	5.477047	94
GCCGTAT	2065	0.0	5.2347307	48-49