FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21808520
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA114500.010.6726894
AGATCGG147700.010.02387494
GATCGGA120450.09.71623894
TAGATCG49400.07.896901692-93
GCGTCGT43500.07.13116194
CGGAAGA153450.06.92224894
TCGGAAG138950.06.866620592-93
CGTCGTG48800.06.06773194
AGCGTCG53450.05.89159292-93
CGCCGTA13803.6379788E-125.78978646-47
AAGATCG69100.05.16941294
TCCGATC19157.894136E-65.15542751
Produced by FastQC (version 0.11.5)