FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21923234
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA122850.09.98483794
TAGATCG52700.09.09630994
ATCGGAA117250.08.417479594
AGATCGG148150.08.406589594
TCGGAAG143000.07.296129794
CGGAAGA158650.06.250546594
CAGATCG70350.06.01248594
AAGATCG69500.05.95077494
CTCGTAT21100.05.457029344-45
AGTCGGT34900.05.3865077
CGTATGC19400.05.087333746-47
AACGATC20650.05.00704238-39
Produced by FastQC (version 0.11.5)