FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005405955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005405955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21923234
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA122200.010.07695794
GCGTCGT46850.09.83140994
TAGATCG49900.08.85373894
ATCGGAA115300.08.53991592-93
AGATCGG148950.08.39344994
TCGGAAG143600.07.102391294
AGCGTCG56600.06.643124692-93
CGTCGTG48650.06.376177394
CGGAAGA162400.06.30913494
AAGATCG67900.05.883672794
AAGAGCG110200.05.62978394
CAGATCG74350.05.499682494
AGAGCGT89100.05.380489394
CGCCGTA16051.0913936E-115.27090146-47
GTCGTGT48600.05.028823494
Produced by FastQC (version 0.11.5)